Influence of Paleolithic Range Contraction, Admixture and Long-Distance Dispersal on Genetic Gradients of Modern Humans in Asia

  1. Branco, Catarina 1
  2. Ray, Nicolas 2
  3. Currat, Mathias 3
  4. Arenas, Miguel 1
  1. 1 Department of Biochemistry, Genetics and Immunology, University of Vigo, Vigo, Spain
  2. 2 GeoHealth group, Institute of Global Health, University of Geneva, 1202 Geneva, Switzerland
  3. 3 Laboratory of Anthropology, Genetics and Peopling History, Department of Genetics and Evolution – Anthropology Unit, University of Geneva, 1205 Geneva, Switzerland
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Editor: Zenodo

Ano de publicación: 2019

Tipo: Dataset

CC BY 4.0

DOI: 10.5281/ZENODO.3570665 lock_openAcceso aberto editor

Resumo

Each folder is identified according to the scenario, and contains another folder with the input files (files *.txt, *.par, *.sam, *.asc) to simulate it, the corresponding simulated genetic data (files *.arp) and the derived PC maps (files *.png). A file with the locations of the samples is also included (coord.txt). * Pure Paleolithic expansion * <br> The folder “Paleo” contains the input files (INFILES), the genetic data and the corresponding PC maps simulated under the scenario of a pure Paleolithic expansion, ignoring the range contraction induced by the LGM and LDD events. * Pure Paleolithic expansion considering the range contraction induced by the LGM * <br> The folder “Paleo_REC” contains the input files (INFILES), the genetic data and the corresponding PC maps simulated under the scenario of a pure Paleolithic expansion suffering the range contraction induced by the LGM. * Pure Paleolithic expansion considering long-distance dispersal (LDD) events * <br> The folder “Paleo_LDD” contains the input files (INFILES), the genetic data and the corresponding PC maps simulated under the scenario of a pure Paleolithic expansion considering LDD events. * Paleolithic expansion followed by two Neolithic expansions (IR=0) from Middle East and East Asia considering the range contraction induced by the LGM * <br> The folder “Paleo2NeoIR0_REC” contains the input files (INFILES), the genetic data and the corresponding PC maps simulated under the scenario of a Paleolithic expansion followed by two Neolithic expansions (IR=0) from Middle East and later from East Asia suffering the range contraction induced by the LGM. * Paleolithic expansion followed by two Neolithic expansions (IR=0) from Middle East and East Asia considering LDD events * <br> The folder “Paleo2NeoIR0_LDD” contains the input files (INFILES), the genetic data and the corresponding PC maps simulated under the scenario of a Paleolithic expansion followed by two Neolithic expansions from Middle East and later from East Asia considering LDD events. * Paleolithic expansion followed by a single Neolithic expansion (IR=0) from Middle East considering the range contraction induced by the LGM * <br> The folder “Paleo_MiddleEastNeoIR0_REC” contains the input files (INFILES), the genetic data and the corresponding PC maps simulated under the scenario of a Paleolithic expansion followed by a single Neolithic expansions (IR=0) from Middle East suffering the range contraction induced by the LGM. * Paleolithic expansion followed by a single Neolithic expansion (IR=0) from East Asia considering the range contraction induced by the LGM * <br> The folder “Paleo_EastAsiaNeoIR0_REC” contains the input files (INFILES) and the corresponding PC maps simulated under the scenario of a Paleolithic expansion followed by a single Neolithic expansion (IR=0) from East Asia suffering the range contraction induced by the LGM. * Paleolithic expansion followed by a single Neolithic expansion (IR=0) from Middle East considering LDD events * <br> The folder “Paleo_MiddleEastNeoIR0_REC” contains the input files (INFILES), the genetic data and the corresponding PC maps simulated under the scenario of a Paleolithic expansion followed by a single Neolithic expansions (IR=0) from Middle East considering LDD events. * Paleolithic expansion followed by a single Neolithic expansion (IR=0) from East Asia considering LDD events * <br> The folder “Paleo_EastAsiaNeoIR0_REC” contains the input files (INFILES) the genetic data and the corresponding PC maps simulated under the scenario of a Paleolithic expansion followed by a single Neolithic expansion (IR=0) from East Asia considering LDD events. * Paleolithic expansion followed by a single Neolithic expansion (IR=0.04) from Middle East considering the range contraction induced by the LGM * <br> The folder “Paleo_MiddleEastNeoIR004_REC” contains the input files (INFILES), the genetic data and the corresponding PC maps simulated under the scenario of a Paleolithic expansion followed by a single Neolithic expansion (IR=0.04) from East Asia suffering the range contraction induced by the LGM. * Paleolithic expansion followed by a single Neolithic expansion (IR=0.04) from East Asia considering the range contraction induced by the LGM * <br> The folder “Paleo_EastAsiaNeoIR0_REC” contains the input files (INFILES), the genetic data and the corresponding PC maps simulated under the scenario of a Paleolithic expansion followed by a single Neolithic expansions (IR=0.04) from East Asia suffering the range contraction induced by the LGM. * Paleolithic expansion followed by a single Neolithic expansion (IR=0.04) from Middle East considering LDD events * <br> The folder “Paleo_MiddleEastNeoIR004_REC” contains the input files (INFILES), the genetic data and the corresponding PC maps simulated under the scenario of a Paleolithic expansion followed by a single Neolithic expansion (IR=0.04) from East Asia considering LDD events. * Paleolithic expansion followed by a single Neolithic expansion (IR=0.04) from East Asia considering LDD events * <br> The folder “Paleo_EastAsiaNeoIR0_REC” contains the input files (INFILES), the genetic data and the corresponding PC maps simulated under the scenario of a Paleolithic expansion followed by a single Neolithic expansions (IR=0.04) from East Asia considering LDD events.