Publicacións en colaboración con investigadores/as de Universidade Do Porto (39)

2024

  1. Auto-phylo v2 and auto-phylo-pipeliner: building advanced, flexible, and reusable pipelines for phylogenetic inferences, estimation of variability levels and identification of positively selected amino acid sites

    JOURNAL OF INTEGRATIVE BIOINFORMATICS

  2. Multiple Lines of Evidence Support 199 SARS-CoV-2 Positively Selected Amino Acid Sites

    International Journal of Molecular Sciences, Vol. 25, Núm. 4

2023

  1. Auto-phylo: A Pipeline Maker for Phylogenetic Studies

    Lecture Notes in Networks and Systems

  2. Auto-phylo: a pipeline maker for phylogenetic studies

    Practical applications of computational biology and bioinformatics, 17th International Conference (PACBB 2023)

  3. MOZART, a QSAR Multi-Target Web-Based Tool to Predict Multiple Drug–Enzyme Interactions

    Molecules, Vol. 28, Núm. 3

  4. To Enhance Full-Text Biomedical Document Classification Through Semantic Enrichment

    Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

2022

  1. A Novel Multi-View Ensemble Learning Architecture to Improve the Structured Text Classification

    Information (Switzerland), Vol. 13, Núm. 6

2021

  1. Classification of full text biomedical documents: Sections importance assessment

    Applied Sciences (Switzerland), Vol. 11, Núm. 6

  2. Computational Resources and Strategies to Construct Single-Molecule Models of FISH

    Methods in Molecular Biology (Humana Press Inc.), pp. 317-330

  3. Computational resources and strategies to assess single-molecule dynamics of the translation process in S. cerevisiae

    Briefings in bioinformatics, Vol. 22, Núm. 1, pp. 219-231

2020

  1. An RNA-seq Based Machine Learning Approach Identifies Latent Tuberculosis Patients With an Active Tuberculosis Profile

    Frontiers in Immunology, Vol. 11

  2. Application of Agent-Based Modelling to Simulate Ribosome Translation

    Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

  3. Inferences on Mycobacterium Leprae Host Immune Response Escape and Antibiotic Resistance Using Genomic Data and GenomeFastScreen

    Practical Applications of Computational Biology & Bioinformatics: 14th International Conference (PACBB 2020)

  4. Ultrasonic-assisted extraction and digestion of proteins from solid biopsies followed by peptide sequential extraction hyphenated to MALDI-based profiling holds the promise of distinguishing renal oncocytoma from chromophobe renal cell carcinoma

    Talanta, Vol. 206

2019

  1. A bioinformatics protocol for quickly creating large-scale phylogenetic trees

    Advances in Intelligent Systems and Computing

  2. Application of agent-based modelling to assess single-molecule transport across the cell envelope of E. coli

    Computers in Biology and Medicine, Vol. 107, pp. 218-226

  3. Bioinformatics Protocols for Quickly Obtaining Large-Scale Data Sets for Phylogenetic Inferences

    Interdisciplinary Sciences: Computational Life Sciences, Vol. 11, Núm. 1

  4. Comparative Study of Feature Selection Methods for Medical Full Text Classification

    Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

  5. DEWE: A novel tool for executing differential expression RNA-Seq workflows in biomedical research

    Computers in Biology and Medicine, Vol. 107, pp. 197-205

  6. EvoPPI 1.0: a Web Platform for Within- and Between-Species Multiple Interactome Comparisons and Application to Nine PolyQ Proteins Determining Neurodegenerative Diseases

    Interdisciplinary Sciences: Computational Life Sciences, Vol. 11, Núm. 1, pp. 45-56