Publications by the researcher in collaboration with Aitor Blanco Míguez (18)

2023

  1. Targeted depletion of pks+ bacteria from a fecal microbiota using specific antibodies

    mSystems, Vol. 8, Núm. 3, pp. e0007923

2020

  1. In silico and functional analyses of immunomodulatory peptides encrypted in the human gut metaproteome

    Journal of Functional Foods, Vol. 70

  2. The extracellular proteins of Lactobacillus acidophilus DSM 20079T display anti-inflammatory effect in both in piglets, healthy human donors and Crohn's Disease patients

    Journal of Functional Foods, Vol. 64

2019

  1. Computational prediction of the bioactivity potential of proteomes based on expert knowledge

    Journal of Biomedical Informatics, Vol. 91

  2. DEWE: A novel tool for executing differential expression RNA-Seq workflows in biomedical research

    Computers in Biology and Medicine, Vol. 107, pp. 197-205

  3. In silico prediction reveals the existence of potential bioactive neuropeptides produced by the human gut microbiota

    Food Research International, Vol. 119, pp. 221-226

  4. New computational framework for the characterisation of next generation probiotics targeting autoimmune and inflammatory bowel disorders

    New computational framework for the characterisation of next generation probiotics targeting autoimmune and inflammatory bowel disorders

  5. Next generation community assessment of biomedical entity recognition web servers: Metrics, performance, interoperability aspects of BeCalm

    Journal of Cheminformatics, Vol. 11, Núm. 1

2018

  1. BlasterJS: A novel interactive JavaScript visualisation component for BLAST alignment results

    PLoS ONE, Vol. 13, Núm. 10

2017

  1. In silico screening of the human gut metaproteome identifies Th17-promoting peptides encrypted in proteins of commensal bacteria

    Frontiers in Microbiology, Vol. 8, Núm. SEP

  2. MAHMI database: A comprehensive MetaHitbased resource for the study of the mechanism of action of the human microbiota

    Database, Vol. 2017, Núm. 1

  3. P4P: A peptidome-based strain-level genome comparison web tool

    Nucleic Acids Research, Vol. 45, Núm. W1, pp. W265-W269

  4. Probiotics, gut microbiota, and their influence on host health and disease

    Molecular Nutrition and Food Research, Vol. 61, Núm. 1

  5. Resources and tools for the high-throughput, multi-omic study of intestinal microbiota

    Briefings in Bioinformatics, Vol. 20, Núm. 3, pp. 1032-1056

2016

  1. A peptidome-based phylogeny pipeline reveals differential peptides at the strain level within Bifidobacterium animalis subsp. lactis

    Food Microbiology, Vol. 60, pp. 137-141

  2. From amino acid sequence to bioactivity: The biomedical potential of antitumor peptides

    Protein Science, Vol. 25, Núm. 6, pp. 1084-1095

  3. Improving Phylogeny Reconstruction at the Strain Level Using Peptidome Datasets

    PLoS Computational Biology, Vol. 12, Núm. 12

  4. Tackling probiotic and gut microbiota functionality through proteomics

    Journal of Proteomics, Vol. 147, pp. 28-39