Publications by the researcher in collaboration with Cristina P. Vieira (25)

2024

  1. Auto-phylo v2 and auto-phylo-pipeliner: building advanced, flexible, and reusable pipelines for phylogenetic inferences, estimation of variability levels and identification of positively selected amino acid sites

    JOURNAL OF INTEGRATIVE BIOINFORMATICS, Vol. 21, Núm. 2

2023

  1. Auto-phylo: A Pipeline Maker for Phylogenetic Studies

    Lecture Notes in Networks and Systems

  2. Auto-phylo: a pipeline maker for phylogenetic studies

    Practical applications of computational biology and bioinformatics, 17th International Conference (PACBB 2023)

  3. EvoPPI 2: A Web and Local Platform for the Comparison of Protein–Protein Interaction Data from Multiple Sources from the Same and Distinct Species

    Lecture Notes in Networks and Systems

  4. On the identification of potential novel therapeutic targets for spinocerebellar ataxia type 1 (SCA1) neurodegenerative disease using EvoPPI3

    Journal of integrative bioinformatics, Vol. 20, Núm. 2

2022

  1. SEDA: A Desktop Tool Suite for FASTA Files Processing

    IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 19, Núm. 3, pp. 1850-1860

  2. The pegi3s Bioinformatics Docker Images Project

    Lecture Notes in Networks and Systems

2021

  1. Inferences on Mycobacterium Leprae Host Immune Response Escape and Antibiotic Resistance Using Genomic Data and GenomeFastScreen

    Advances in Intelligent Systems and Computing

  2. On the Identification of Clinically Relevant Bacterial Amino Acid Changes at the Whole Genome Level Using Auto-PSS-Genome

    Interdisciplinary Sciences: Computational Life Sciences, Vol. 13, Núm. 2, pp. 334-343

2020

  1. Inferences on Mycobacterium Leprae Host Immune Response Escape and Antibiotic Resistance Using Genomic Data and GenomeFastScreen

    Practical Applications of Computational Biology & Bioinformatics: 14th International Conference (PACBB 2020)

  2. Inferring Positive Selection in Large Viral Datasets

    Advances in Intelligent Systems and Computing

2019

  1. A bioinformatics protocol for quickly creating large-scale phylogenetic trees

    Advances in Intelligent Systems and Computing

  2. ATXN1 N-terminal region explains the binding differences of wild-type and expanded forms

    BMC Medical Genomics, Vol. 12, Núm. 1

  3. BDBM 1.0: A Desktop Application for Efficient Retrieval and Processing of High-Quality Sequence Data and Application to the Identification of the Putative Coffea S-Locus

    Interdisciplinary Sciences: Computational Life Sciences, Vol. 11, Núm. 1, pp. 57-67

  4. Bioinformatics Protocols for Quickly Obtaining Large-Scale Data Sets for Phylogenetic Inferences

    Interdisciplinary Sciences: Computational Life Sciences, Vol. 11, Núm. 1

  5. EvoPPI 1.0: a Web Platform for Within- and Between-Species Multiple Interactome Comparisons and Application to Nine PolyQ Proteins Determining Neurodegenerative Diseases

    Interdisciplinary Sciences: Computational Life Sciences, Vol. 11, Núm. 1, pp. 45-56

  6. EvoPPI: A web application to compare protein-protein interactions (PPIs) from different databases and species

    Advances in Intelligent Systems and Computing

  7. Multiple independent L-gulonolactone oxidase (GULO) gene losses and vitamin C synthesis reacquisition events in non-Deuterostomian animal species

    BMC Evolutionary Biology, Vol. 19, Núm. 1

  8. Predicting specificities under the non-self gametophytic self-incompatibility recognition model

    Frontiers in Plant Science, Vol. 10

2018

  1. Large Scale Analyses and Visualization of Adaptive Amino Acid Changes Projects

    Interdisciplinary Sciences: Computational Life Sciences, Vol. 10, Núm. 1, pp. 24-32