Publications (77) Publications de JOAO MIGUEL FERNANDES ALVES

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2025

  1. An expanded metabolic pathway for androgen production by commensal bacteria

    Nature Microbiology, Vol. 10, Núm. 5, pp. 1084-1098

  2. Genomics guiding personalized first-line immunotherapy response in lung and bladder tumors

    Journal of Translational Medicine, Vol. 23, Núm. 1

  3. Pangenome Analysis of Clostridium scindens: A Collection of Diverse Bile Acid- and Steroid-Metabolizing Commensal Gut Bacterial Strains

    Microorganisms, Vol. 13, Núm. 4

2024

  1. Genome sequences of nine Clostridium scindens strains isolated from human feces

    Microbiology Resource Announcements, Vol. 13, Núm. 11

  2. The genome of the endosymbiont-harboring trypanosomatid Kentomonas sorsogonicus

    Protistology, Vol. 18, Núm. 1, pp. 72-81

2023

  1. Complete genome sequence of the archetype bile acid 7α-dehydroxylating bacterium, Clostridium scindens VPI12708, isolated from human feces, circa 1980

    Microbiology Resource Announcements, Vol. 12, Núm. 9

  2. Genomes of Endotrypanum monterogeii from Panama and Zelonia costaricensis from Brazil: Expansion of Multigene Families in Leishmaniinae Parasites That Are Close Relatives of Leishmania spp.

    Pathogens, Vol. 12, Núm. 12

2022

  1. CellPhy: accurate and fast probabilistic inference of single-cell phylogenies from scDNA-seq data

    Genome Biology, Vol. 23, Núm. 1

  2. Clonality and timing of relapsing colorectal cancer metastasis revealed through whole-genome single-cell sequencing

    Cancer Letters, Vol. 543

  3. Comparative analysis of capture methods for genomic profiling of circulating tumor cells in colorectal cancer

    Genomics, Vol. 114, Núm. 6

  4. Formation of secondary allo-bile acids by novel enzymes from gut Firmicutes

    Gut Microbes, Vol. 14, Núm. 1

  5. Genetic and morphological polymorphisms of Aedes scapularis (Diptera: Culicidae), vector of filariae and arboviruses

    Infection, Genetics and Evolution, Vol. 97

  6. SIEVE: joint inference of single-nucleotide variants and cell phylogeny from single-cell DNA sequencing data

    Genome Biology, Vol. 23, Núm. 1

  7. Single-cell mtDNA heteroplasmy in colorectal cancer

    Genomics, Vol. 114, Núm. 2

  8. The Importance of Glycerophospholipid Production to the Mutualist Symbiosis of Trypanosomatids

    Pathogens, Vol. 11, Núm. 1

2021

  1. Completion of the gut microbial epi-bile acid pathway

    Gut Microbes, Vol. 13, Núm. 1, pp. 1-20

  2. Editorial: Symbioses Between Protists and Bacteria/Archaea

    Frontiers in Microbiology

  3. Endosymbiont capture, a repeated process of endosymbiont transfer with replacement in Trypanosomatids angomonas Spp.

    Pathogens, Vol. 10, Núm. 6

  4. Phylogeny and temporal diversification of mosquitoes (Diptera: Culicidae) with an emphasis on the Neotropical fauna

    Systematic Entomology, Vol. 46, Núm. 4, pp. 798-811

2020

  1. A collection of bacterial isolates from the pig intestine reveals functional and taxonomic diversity

    Nature Communications, Vol. 11, Núm. 1