Publications (79) HUGO LOPEZ FERNANDEZ publications

2024

  1. Multiple Lines of Evidence Support 199 SARS-CoV-2 Positively Selected Amino Acid Sites

    International Journal of Molecular Sciences, Vol. 25, Núm. 4

  2. Optical diagnosis in still images of colorectal polyps: comparison between expert endoscopists and PolyDeep, a Computer-Aided Diagnosis system

    Frontiers in Oncology, Vol. 14

  3. SEDA 2024 update: enhancing the SEquence DAtaset builder for seamless integration into automated data analysis pipelines

    BMC Bioinformatics, Vol. 25, Núm. 1

2023

  1. Auto-phylo: a pipeline maker for phylogenetic studies

    Practical applications of computational biology and bioinformatics, 17th International Conference (PACBB 2023)

  2. EvoPPI 2: A Web and Local Platform for the Comparison of Protein–Protein Interaction Data from Multiple Sources from the Same and Distinct Species

    Lecture Notes in Networks and Systems

  3. MiRNA Differences Related to Treatment-Resistant Schizophrenia

    International Journal of Molecular Sciences, Vol. 24, Núm. 3

  4. MyBrain-Seq: A Pipeline for MiRNA-Seq Data Analysis in Neuropsychiatric Disorders

    Biomedicines, Vol. 11, Núm. 4

  5. Negative Samples for Improving Object Detection—A Case Study in AI-Assisted Colonoscopy for Polyp Detection

    Diagnostics, Vol. 13, Núm. 5

  6. On the identification of potential novel therapeutic targets for spinocerebellar ataxia type 1 (SCA1) neurodegenerative disease using EvoPPI3

    Journal of integrative bioinformatics, Vol. 20, Núm. 2

  7. PanDrugs2: Prioritizing cancer therapies using integrated individual multi-omics data

    Nucleic Acids Research, Vol. 51, Núm. W1, pp. W411-W418

  8. Pathway-guided monitoring of the disease course in bladder cancer with longitudinal urine proteomics

    COMMUNICATIONS MEDICINE, Vol. 3, Núm. 1

  9. Proteomic analysis of chromophobe renal cell carcinoma and benign renal oncocytoma biopsies reveals shared metabolic dysregulation

    Clinical Proteomics, Vol. 20, Núm. 1

  10. Towards a Flexible and Portable Workflow for Analyzing miRNA-Seq Neuropsychiatric Data: An Initial Replicability Assessment

    Lecture Notes in Networks and Systems

2022

  1. On the Reproducibility of MiRNA-Seq Differential Expression Analyses in Neuropsychiatric Diseases

    Lecture Notes in Networks and Systems

  2. Performance of Convolutional Neural Networks for Polyp Localization on Public Colonoscopy Image Datasets

    Diagnostics, Vol. 12, Núm. 4

  3. Real-time polyp detection model using convolutional neural networks

    Neural Computing and Applications, Vol. 34, Núm. 13, pp. 10375-10396

  4. SEDA: A Desktop Tool Suite for FASTA Files Processing

    IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 19, Núm. 3, pp. 1850-1860

  5. The pegi3s Bioinformatics Docker Images Project

    Lecture Notes in Networks and Systems

2021

  1. Application of miRNA-seq in neuropsychiatry: A methodological perspective

    Computers in Biology and Medicine, Vol. 135

  2. Compi Hub: A Public Repository for Sharing and Discovering Compi Pipelines

    Advances in Intelligent Systems and Computing